Managing inventory effectively is one of the most crucial aspects of running a successful eCommerce business. As the online retail industry continues to grow rapidly, having the right tools in place to monitor stock levels, manage orders, and forecast demand can make a significant difference in profitability and customer satisfaction. In 2025, numerous advanced inventory management tools are available that combine AI, automation, and intuitive dashboards to help eCommerce businesses of all sizes scale efficiently.
Whether you’re a small online boutique or a large-scale retail operation, the following are 12 of the best eCommerce inventory management tools in 2025 that you should consider integrating into your business.
1. NetSuite Inventory Management
NetSuite by Oracle is a cloud-based inventory management solution known for its scalability. It’s ideal for medium to large enterprises that require robust functionality beyond basic tracking. Real-time visibility into inventory and advanced demand planning make it a powerhouse for growing operations.
Key features:
- Cloud-based unified platform
- Multi-location inventory tracking
- Built-in analytics and forecasting tools
- Integrates with CRM and financials
2. Zoho Inventory
Zoho Inventory is a popular choice among small to medium-sized eCommerce businesses. Offering great value for money, it integrates seamlessly with online marketplaces like Shopify, Amazon, and eBay.
Key features:
- Barcode scanning support
- Multi-channel order management
- Stock level notifications
- Custom workflows and automation
3. TradeGecko (Now QuickBooks Commerce)
TradeGecko, rebranded as QuickBooks Commerce, combines inventory management with accounting, making it a strong choice for sellers who value financial oversight. It’s especially popular among DTC (direct-to-consumer) brands.
Key features:
- Integrated accounting tools
- Order fulfilment automation
- Real-time inventory sync
- Wholesale and B2B features
4. Cin7
Cin7 stands out for its all-in-one approach linking inventory, POS, EDI, and 3PL into one streamlined system. It’s ideal for omnichannel retailers who require full control and real-time coordination across channels.
Key features:
- POS and warehouse integration
- E-commerce native integrations
- Multi-currency support
- Customizable dashboards
5. DEAR Systems
DEAR Systems offers a robust cloud ERP solution tailored for inventory-centric businesses. With features ranging from manufacturing, purchasing, to sales, it caters to complex product environments.
Key features:
- Batch and serial number tracking
- Automated reorder points
- Integrated eCommerce syncing
- Real-time data reporting
6. inFlow Inventory
If you’re looking for an intuitive, easy-to-set-up inventory solution, inFlow offers flexibility and powerful functionality for both desktop and mobile users.
Key features:
- Mobile app for inventory scans
- Invoice and quote generation
- Works offline with local databases
- Supports manufacturing workflows
7. Skubana (Now Extensiv Order Manager)
Skubana, now part of the Extensiv platform, is tailored for high-volume brands dealing with complex logistics. It brings inventory, orders, and analytics into one central location.
Key features:
- Centralized order routing
- Advanced demand forecasting
- Marketplace integrations (Amazon, Walmart, Shopify)
- Custom API support
8. Katana MRP
Katana is best known for serving manufacturers and craftspeople who sell online. It’s ideal for production-based businesses that want both inventory and manufacturing management in one tool.
Key features:
- Visual production planning
- Real-time inventory tracking
- Shop floor control app
- Integration with Shopify and WooCommerce
9. Ordoro
Highly regarded for its simplicity and power, Ordoro provides small businesses with enterprise-grade functionality. It handles multi-channel shipping, dropshipping workflows, and inventory syncing efficiently.
Key features:
- Automated purchase orders
- Shipping label creation
- Supplier management tools
- Modular pricing plans
10. Sellbrite
Sellbrite, acquired by GoDaddy, is a multi-channel listing and inventory platform that focuses on centralized management for small and mid-sized retailers. Its seamless integration with top marketplaces helps prevent overselling.
Key features:
- Sync inventory in real-time
- FBA compatibility
- Centralized order shipping
- Easy-to-use UI
11. Finale Inventory
Finale Inventory is a cloud-based solution that shines with its high-volume capabilities. Businesses relying on barcode scanning, multi-warehouse needs, and complex reordering can leverage Finale’s flexible features.
Key features:
- High-volume inventory sync
- RFID and barcode support
- Automated reorder systems
- Cloud access from any device
12. Fishbowl Inventory
A favorite among QuickBooks users, Fishbowl seamlessly bridges accounting and inventory management. Though traditionally used by manufacturers and wholesalers, Fishbowl’s latest updates have made it friendlier for eCommerce retailers.
Key features:
- Integration with QuickBooks and Xero
- Automatic order fulfillment workflows
- Warehouse and bin location tracking
- Easy export for reporting and tax purposes
Choosing the Right Tool in 2025
The ideal inventory management tool depends on your business model, scale, and complexity. Here are some quick considerations:
- For Shopify-centric sellers: Consider Zoho Inventory or Skubana for seamless integration.
- For large, complex operations: Tools like NetSuite or Cin7 offer ERP-grade functionality.
- For manufacturers or makers: Katana and Fishbowl offer production management features.
- For budget-conscious businesses: Options like Ordoro or inFlow provide depth without high costs.
Final Thoughts
Inventory management in 2025 is more than just keeping track of what’s in the warehouse—it’s about creating a seamless, intelligent supply chain that complements your store’s operations. The right platform can streamline processes, reduce waste, minimize stockouts, and boost customer satisfaction.
As eCommerce evolves, automation and integration will become increasingly essential. By investing in one of these top inventory management tools, your business will be well-positioned to compete and thrive in an ever-changing digital marketplace.